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SRX5843355: Nextera Flex library of Staphylococcus epidermidis, Strain SK135
1 ILLUMINA (Illumina NovaSeq 6000) run: 512,742 spots, 151.8M bases, 48.2Mb downloads

Design: Nextera Flex
Submitted by: University of Technology Sydney
Study: Development & evaluation of Morphoseq synthetic long read sequencing technology
show Abstracthide Abstract
This project aims to evaluate a new method for generating synthetic long reads from short read (Illumina, BGI, etc) sequencing data. Long templates (8-10kbp) are randomly mutagenized using primer extension in the presence of the nucleotide analogue dPTP, which can base pair with A or G. The dPTP is then removed and a random set of mutations are fixed via a further primer extension in the presence of only natural nucleotides. Finally, a targeted number of the mutagenized templates are replicated with PCR and used to make a short read sequencing library. Short reads from the same template can be identified via the presence of shared mutations in overlapping regions.
Sample: MIGS Cultured Bacterial/Archaeal sample from Staphylococcus epidermidis SK135
SAMN00008358 • SRS010138 • All experiments • All runs
Library:
Name: HM-118D
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 512,742 spots, 151.8M bases, 48.2Mb
Run# of Spots# of BasesSizePublished
SRR9067239512,742151.8M48.2Mb2019-05-23

ID:
7852762

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